I can't seem to freaking win on this problem. After having the shop do the 'All Systems Reset' i took it on a 4 hour drive to my Daughter's graduation-Go Noles!!. And for the first 50 miles or so it was no better at all but as the drive went on it did seem to get better and I thought it may have actually been fixed. Well it wasn't, not really anyways. Just periodically the truck would start to fight me and try to overcorrect the same as it has been doing. When I got home last night I throw Forscan back on and it still shows the Absolute angle as the same -304.9 so I'm guessing that is not part of the process Ford did. Although they did do the tire size change so I know they were in it at least as the speedo matched my app.
What is weird is that I started playing around with the Lane Keeping system and when I changed the alert the wheel vibrated but I could not get it to respond when it should have crossing lines regardless of what mode I was set to. Now for the embarrassing part-I'm not sure it was ever actually working. I've been so focused on this problem that I don't recall ever noticing a vibration before.
Just wanted to update that it's getting better but still a problem. Guess I'm gonna take it back to Ford to have them test the Alert system now also since neither me or the wife felt any change in the wheel when crossing lines.

